This study aimed to explore the factors influencing food hygiene behaviours among child caregivers in Chikwawa district, Malawi. This research focused on three specific hygiene behaviours: keeping utensils on an elevated surface, using soap to clean kitchen utensils, and washing hands with soap at critical times. These practises are known to contribute to the reduction in diarrhoeal disease. To understand these behaviours, this study utilised multilevel binary logistic models to examine variations at both the household and village levels. The findings reveal that educational background, age group, occupation, self-confidence, intervention, self-will, and perception were the most significant factors influencing food hygiene behaviours. Notably, there were significant variations at the village level (p < 0.00001), while no significant variations were observed at the household level (p > 0.1). Additionally, caregivers from areas where interventions were implemented showed a positive response to these interventions.