Dr. Amelia Taylor

Dr. Amelia Taylor

Co-author

Computing & Information Technology

19 publications

Amelia Taylor is a lecturer in Artificial Intelligence at the Malawi University of Business and Applied Sciences, former the University of Malawi, the Polytechnic. She teaches Artificial Intelligence, Computational Intelligence and programming modules. In addition, she teaches and supervises MSc and...

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Enabling data sharing and utilization for African population health data using OHDSI tools with an OMOP-common data model

Journal Article
Published 11 months ago, 308 views
Author
Sylvia Kiwuwa-Muyingo
Co-authors
Jim Todd, Tathagata Bhattacharjee, Amelia Taylor, Dr. Amelia Taylor, Jay Greenfield
Abstract
The COVID-19 pandemic has spurred the use of AI and DS innovations in data collection and aggregation. Extensive data on many aspects of the COVID-19 has been collected and used to optimize public health response to the pandemic and to manage the recovery of patients in Sub-Saharan Africa. However, there is no standard mechanism for collecting, documenting and disseminating COVID-19 related data or metadata, which makes the use and reuse a challenge. INSPIRE utilizes the Observational Medical Outcomes Partnership (OMOP) as the Common Data Model (CDM) implemented in the cloud as a Platform as a Service (PaaS) for COVID-19 data. The INSPIRE PaaS for COVID-19 data leverages the cloud gateway for both individual research organizations and for data networks. Individual research institutions may choose to use the PaaS to access the FAIR data management, data analysis and data sharing capabilities which come with the OMOP CDM. Network data hubs may be interested in harmonizing data across localities using the CDM conditioned by the data ownership and data sharing agreements available under OMOP's federated model. The INSPIRE platform for evaluation of COVID-19 Harmonized data (PEACH) harmonizes data from Kenya and Malawi. Data sharing platforms must remain trusted digital spaces that protect human rights and foster citizens' participation is vital in an era where information overload from the internet exists. The channel for sharing data between localities is included in the PaaS and is based on data sharing agreements provided by the data producer. This allows the data producers to retain control over how their data are used, which can be further protected through the use of the federated CDM. Federated regional OMOP-CDM are based on the PaaS instances and analysis workbenches in INSPIRE-PEACH with harmonized analysis powered by the AI technologies in OMOP. These AI technologies can be used to discover and evaluate pathways that COVID-19 cohorts take through public health interventions and treatments. By using both the data mapping and terminology mapping, we construct ETLs that populate the data and/or metadata elements of the CDM, making the hub both a central model and a distributed model.
Year of Publication
2023
Journal Name
Front. Public Health
Volume
11
Issue
1
Page Numbers
1116682
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